The issue isn't that there's two lines, but rather you go into limp mode with aftermarket intakes because a Check valve is necessary. I have a MAP intake I've been wanting to use, but the 2016 owners that just capped off the "boost bleed" line eventually threw a code and limp mode because there is no check valve on the aftermarket intakes. MAP finally rigged a set of replacement vacuum lines with a t fitting and check valve to use with their intake, as well as Mishimoto.
What I would like to know is how blocking the line without the valve, the line going to the charge pipe, effects throttle response. I also have the Tune+ spec Turbosmart wastegate actuator which prevents surging, however I feel partial throttle is a pain at times... It's typically power on, or vacuum and not the greatest control or modulation at partial throttle.
For example, with partial throttle, the turbo will often quickly spool to 14-22psi but briefly, like a rubber band effect. When I give it WOT I get full boost, 22-25psi all the way until I shift. Does that make sense?