Alright so I have a guess as to what's causing the motor to miss but I'm going to go all out. I've replaced the boots with brand new coils, got brand new stock spark plugs and it responds noticably better. I also got a new maf sensor and installed it. I wired in a oil pressure gauge and all works well, did an oil change with 5w-40 motul oil which ends my break-in period. Next weekend I will be swapping out the manifold with a known good, changing out the crankcase pressure valve (this is probably where my small vacuum leak has been coming from) and fixing my door trim which I've put off for far too long.
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